If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 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'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 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'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ), 'gf_id' => 'HOM05D000788', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000788' ), 'data_identifier' => 'HOM05D000788', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000788', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '751', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p35960' => 'bna', 'A04p26880' => 'bna', 'A05p00910' => 'bna', 'A05p10450' => 'bna', 'A05p32980' => 'bna', 'A05p39580' => 'bna', 'A06p33880' => 'bna', 'A06p33890' => 'bna', 'A07p19370' => 'bna', 'A08p35530' => 'bna', 'A10p06130' => 'bna', 'A10p33260' => 'bna', 'Aa31LG1G22400' => 'aar', 'Aa31LG3G1890' => 'aar', 'Aa31LG5G7340' => 'aar', 'Aa31LG8G3690' => 'aar', 'Aa31LG9G15360' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_344.2931' => 'aag', 'Actinidia00028' => 'ach', 'Actinidia03387' => 'ach', 'Actinidia05309' => 'ach', 'Actinidia07038' => 'ach', 'Actinidia13141' => 'ach', 'Actinidia14305' => 'ach', 'Actinidia23943' => 'ach', 'Actinidia25950' => 'ach', 'Actinidia40257' => 'ach', 'Ah.04g153850' => 'amhyb', 'Ah.07g200120' => 'amhyb', 'Ah.12g054690' => 'amhyb', 'Ah.13g074910' => 'amhyb', 'Ah.15g089910' => 'amhyb', 'Ah.15g097150' => 'amhyb', 'AL1G17820' => 'aly', 'AL3G20570' => 'aly', 'AL3G29420' => 'aly', 'AL4G23420' => 'aly', 'AL4G31400' => 'aly', 'AL4G46390' => 'aly', 'AL6G11630' => 'aly', 'Aqoxy2G02116' => 'aox', 'Aqoxy3G02462' => 'aox', 'Aqoxy4G02916' => 'aox', 'Aqoxy5G00714' => 'aox', 'Aqoxy5G02868' => 'aox', 'arahy.Tifrunner.gnm1.ann1.0L2MCG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2C8XNL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7J2BAB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CME6C7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HY94UM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IRP95Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R8LTT2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T5NBQ0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W2G52I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.W8ZB9B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WW0CK7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X4YETQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z4H4PD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZY3Q1N' => 'arhy', 'AT1G07630' => 'ath', 'AT2G28890' => 'ath', 'AT2G35350' => 'ath', 'AT2G46920' => 'ath', 'AT3G09400' => 'ath', 'AT3G16560' => 'ath', 'AT5G02400' => 'ath', 'ATR0049G032' => 'atr', 'ATR0559G276' => 'atr', 'ATR0582G337' => 'atr', 'ATR0582G360' => 'atr', 'ATR0796G089' => 'atr', 'ATR0796G163' => 'atr', 'Atru.chr3.3896' => 'acertr', 'Atru.chr4.2830' => 'acertr', 'Atru.chr5.834' => 'acertr', 'Atru.chr6.1756' => 'acertr', 'Atru.chr8.1971' => 'acertr', 'AUR62001792' => 'cqu', 'AUR62006431' => 'cqu', 'AUR62007253' => 'cqu', 'AUR62009580' => 'cqu', 'AUR62018745' => 'cqu', 'AUR62029785' => 'cqu', 'AUR62040374' => 'cqu', 'AUR62041206' => 'cqu', 'BcaB02g09442' => 'bca', 'BcaB02g09449' => 'bca', 'BcaB02g10071' => 'bca', 'BcaB02g10210' => 'bca', 'BcaB03g11599' => 'bca', 'BcaB03g13382' => 'bca', 'BcaB03g14319' => 'bca', 'BcaB06g25646' => 'bca', 'BcaB06g25756' => 'bca', 'BcaB06g28839' => 'bca', 'BcaB06g28840' => 'bca', 'BcaC01g01452' => 'bca', 'BcaC01g04234' => 'bca', 'BcaC02g07717' => 'bca', 'BcaC02g11022' => 'bca', 'BcaC02g11636' => 'bca', 'BcaC02g12636' => 'bca', 'BcaC05g24684' => 'bca', 'BcaC05g26503' => 'bca', 'BcaC05g29514' => 'bca', 'BcaC05g29671' => 'bca', 'BcaC06g31986' => 'bca', 'BcaNung06439' => 'bca', 'BolC3t16629H' => 'bol', 'BolC3t21534H' => 'bol', 'BolC4t21759H' => 'bol', 'BolC4t22929H' => 'bol', 'BolC4t23732H' => 'bol', 'BolC4t27911H' => 'bol', 'BolC5t29334H' => 'bol', 'BolC5t31281H' => 'bol', 'BolC5t33728H' => 'bol', 'BolC5t34510H' => 'bol', 'BolC8t47121H' => 'bol', 'BolC9t60150H' => 'bol', 'BraA03t12768Z' => 'bra', 'BraA04t18188Z' => 'bra', 'BraA05t19092Z' => 'bra', 'BraA05t19982Z' => 'bra', 'BraA05t22124Z' => 'bra', 'BraA05t22738Z' => 'bra', 'BraA06t26323Z' => 'bra', 'BraA06t26324Z' => 'bra', 'BraA07t29642Z' => 'bra', 'BraA08t35459Z' => 'bra', 'BraA10t42881Z' => 'bra', 'BraA10t45357Z' => 'bra', 'C03p43600' => 'bna', 'C03p92180' => 'bna', 'C04p01060' => 'bna', 'C04p12850' => 'bna', 'C04p22090' => 'bna', 'C04p50710' => 'bna', 'C04p64270' => 'bna', 'C05p05630' => 'bna', 'C05p25530' => 'bna', 'C05p49760' => 'bna', 'C05p58600' => 'bna', 'C08p03230' => 'bna', 'C09p06910' => 'bna', 'C09p74170' => 'bna', 'CAN.G1195.5' => 'can', 'CAN.G129.23' => 'can', 'CAN.G1362.16' => 'can', 'CAN.G1856.10' => 'can', 'CAN.G326.10' => 'can', 'CAN.G359.5' => 'can', 'CAN.G394.54' => 'can', 'CAN.G484.30' => 'can', 'CAN.G845.36' => 'can', 'CANSAT21G2517' => 'cansat', 'CANSAT35G0665' => 'cansat', 'CANSAT54G0387' => 'cansat', 'CANSAT78G0559' => 'cansat', 'CARHR007420' => 'chi', 'CARHR083790' => 'chi', 'CARHR091760' => 'chi', 'CARHR122060' => 'chi', 'CARHR129510' => 'chi', 'CARHR211010' => 'chi', 'Carub.0001s0696' => 'cru', 'Carub.0003s0851' => 'cru', 'Carub.0003s1628' => 'cru', 'Carub.0004s0988' => 'cru', 'Carub.0004s1704' => 'cru', 'Carub.0004s2965' => 'cru', 'Carub.0006s0119' => 'cru', 'Ca_01939_v3' => 'car', 'Ca_10228_v3' => 'car', 'Ca_19163_v3' => 'car', 'Ca_21506_v3' => 'car', 'Ca_22061_v3' => 'car', 'Ca_26029_v3' => 'car', 'Cc01_g12800' => 'ccan', 'Cc03_g02000' => 'ccan', 'Cc06_g02670' => 'ccan', 'Cc08_g02410' => 'ccan', 'CDE01G0694' => 'cde', 'CDE02G2641' => 'cde', 'CDE02G2933' => 'cde', 'CDE04G0634' => 'cde', 'CDE04G2726' => 'cde', 'CDE05G0941' => 'cde', 'CDE05G1092' => 'cde', 'CDE05G2475' => 'cde', 'CDE07G0701' => 'cde', 'CDE09G0558' => 'cde', 'CDE11G0166' => 'cde', 'CDE11G1027' => 'cde', 'CDE12G0407' => 'cde', 'CDE12G0707' => 'cde', 'CDE12G0852' => 'cde', 'Cfa004927' => 'cfa', 'Cfa011496' => 'cfa', 'Cfa012409' => 'cfa', 'Cfa014732' => 'cfa', 'Cfa015381' => 'cfa', 'Cfa017384' => 'cfa', 'Ciclev10005061m.g' => 'ccl', 'Ciclev10011223m.g' => 'ccl', 'Ciclev10013930m.g' => 'ccl', 'Ciclev10018806m.g' => 'ccl', 'Ciclev10027924m.g' => 'ccl', 'Ciclev10031727m.g' => 'ccl', 'CiPaw.02G083200' => 'cil', 'CiPaw.07G127200' => 'cil', 'CiPaw.08G081400' => 'cil', 'CiPaw.09G192300' => 'cil', 'CiPaw.11G090900' => 'cil', 'CiPaw.12G061700' => 'cil', 'CiPaw.13G095000' => 'cil', 'CiPaw.14G068700' => 'cil', 'ClCG02G020180' => 'cla', 'ClCG04G001060' => 'cla', 'ClCG04G008170' => 'cla', 'ClCG05G006060' => 'cla', 'ClCG10G001820' => 'cla', 'COL.COLO4_13880' => 'col', 'COL.COLO4_14805' => 'col', 'COL.COLO4_17075' => 'col', 'COL.COLO4_18506' => 'col', 'COL.COLO4_23099' => 'col', 'Cpa.g.c35224' => 'cpa', 'Cpa.g.sc16.166' => 'cpa', 'Cpa.g.sc576.1' => 'cpa', 'Cpa.g.sc81.156' => 'cpa', 'CsaV3_3G001890' => 'csa', 'CsaV3_3G014600' => 'csa', 'CsaV3_4G025000' => 'csa', 'CsaV3_6G016880' => 'csa', 'CSS0007114' => 'camsi', 'CSS0008704' => 'camsi', 'CSS0011171' => 'camsi', 'CSS0016372' => 'camsi', 'CSS0016896' => 'camsi', 'CSS0022000' => 'camsi', 'CSS0027684' => 'camsi', 'CSS0029360' => 'camsi', 'CSS0037046' => 'camsi', 'CSS0043517' => 'camsi', 'DCAR_005611' => 'dca', 'DCAR_008286' => 'dca', 'DCAR_009232' => 'dca', 'DCAR_014848' => 'dca', 'DCAR_015747' => 'dca', 'DCAR_017862' => 'dca', 'DCAR_018239' => 'dca', 'DCAR_018907' => 'dca', 'DCAR_024566' => 'dca', 'DCAR_027079' => 'dca', 'Dinv12071' => 'din', 'Dinv12072' => 'din', 'Dinv12418' => 'din', 'Dinv16995' => 'din', 'Dinv18841' => 'din', 'Dinv25199' => 'din', 'Dinv33184' => 'din', 'Dinv35607' => 'din', 'Dinv37175' => 'din', 'Dinv42944' => 'din', 'Dinv43156' => 'din', 'Duzib052G0646' => 'dzi', 'Duzib068G0641' => 'dzi', 'Duzib084G0969' => 'dzi', 'Duzib133G1112' => 'dzi', 'Duzib138G0494' => 'dzi', 'Duzib150G1113' => 'dzi', 'Duzib151G0526' => 'dzi', 'Duzib168G1314' => 'dzi', 'Duzib170G1129' => 'dzi', 'Duzib205G0839' => 'dzi', 'ECA233G1029' => 'eca', 'ECA236G2379' => 'eca', 'ECA240G0474' => 'eca', 'ECA240G1086' => 'eca', 'ECA240G4533' => 'eca', 'ECA248G0916' => 'eca', 'ECA248G1150' => 'eca', 'EL10Ac3g06591' => 'bvu', 'EL10Ac5g12165' => 'bvu', 'EL10Ac7g16013' => 'bvu', 'EL10Ac7g17119' => 'bvu', 'Eucgr.A00991' => 'egr', 'Eucgr.B01309' => 'egr', 'Eucgr.B02371' => 'egr', 'Eucgr.D02181' => 'egr', 'Eucgr.J01664' => 'egr', 'Eucgr.K03138' => 'egr', 'FAN02G2660' => 'fan', 'FAN04G1744' => 'fan', 'FAN05G4661' => 'fan', 'FAN07G1104' => 'fan', 'FAN08G0614' => 'fan', 'FAN09G0886' => 'fan', 'FAN11G3366' => 'fan', 'FAN12G1695' => 'fan', 'FAN12G3870' => 'fan', 'FAN13G1759' => 'fan', 'FAN14G0688' => 'fan', 'FAN16G1169' => 'fan', 'FAN17G1609' => 'fan', 'FAN18G1800' => 'fan', 'FAN21G1254' => 'fan', 'FAN25G1056' => 'fan', 'FvH4_3g35990' => 'fve', 'FvH4_4g17950' => 'fve', 'FvH4_5g21630' => 'fve', 'FvH4_6g13730' => 'fve', 'Glyma.01G199600' => 'gma', 'Glyma.03G225800' => 'gma', 'Glyma.05G113400' => 'gma', 'Glyma.07G131800' => 'gma', 'Glyma.07G248000' => 'gma', 'Glyma.09G045100' => 'gma', 'Glyma.11G042300' => 'gma', 'Glyma.11G139500' => 'gma', 'Glyma.12G063100' => 'gma', 'Glyma.17G026100' => 'gma', 'Glyma.17G153800' => 'gma', 'Glyma.18G180400' => 'gma', 'Glyma.19G222700' => 'gma', 'Gohir.A03G042000' => 'ghi', 'Gohir.A05G095800' => 'ghi', 'Gohir.A09G156200' => 'ghi', 'Gohir.A09G239400' => 'ghi', 'Gohir.A10G163800' => 'ghi', 'Gohir.A11G106000' => 'ghi', 'Gohir.A12G209700' => 'ghi', 'Gohir.D03G126000' => 'ghi', 'Gohir.D05G096100' => 'ghi', 'Gohir.D09G151600' => 'ghi', 'Gohir.D09G240300' => 'ghi', 'Gohir.D10G170200' => 'ghi', 'Gohir.D11G110900' => 'ghi', 'Gohir.D12G212400' => 'ghi', 'Gorai.003G132200' => 'gra', 'Gorai.006G172900' => 'gra', 'Gorai.006G263300' => 'gra', 'Gorai.007G118600' => 'gra', 'Gorai.008G228000' => 'gra', 'Gorai.009G099400' => 'gra', 'Gorai.011G189700' => 'gra', 'GSVIVG01001129001' => 'vvi', 'GSVIVG01013178001' => 'vvi', 'GSVIVG01017754001' => 'vvi', 'GSVIVG01024976001' => 'vvi', 'GSVIVG01028223001' => 'vvi', 'GSVIVG01028224001' => 'vvi', 'GSVIVG01034176001' => 'vvi', 'HanXRQChr03g0080761' => 'han', 'HanXRQChr05g0134881' => 'han', 'HanXRQChr08g0221041' => 'han', 'HanXRQChr08g0234791' => 'han', 'HanXRQChr11g0327411' => 'han', 'HanXRQChr13g0411331' => 'han', 'HanXRQChr13g0416691' => 'han', 'HanXRQChr16g0507761' => 'han', 'Haze_01209' => 'cav', 'Haze_05167' => 'cav', 'Haze_08269' => 'cav', 'Haze_20787' => 'cav', 'Haze_24090' => 'cav', 'Hma1.2p1_0035F.1_g022350' => 'hma', 'Hma1.2p1_0418F.1_g149055' => 'hma', 'Hma1.2p1_0738F.1_g211040' => 'hma', 'Hma1.2p1_0870F.1_g230880' => 'hma', 'Hma1.2p1_1899F.1_g306980' => 'hma', 'Hma1.2p1_2232F.1_g317630' => 'hma', 'Hma1.2p1_2670F.1_g326630' => 'hma', 'HPP92_002648' => 'vpl', 'HPP92_014305' => 'vpl', 'HPP92_014961' => 'vpl', 'HPP92_014963' => 'vpl', 'HPP92_018125' => 'vpl', 'HPP92_018146' => 'vpl', 'HPP92_019192' => 'vpl', 'HPP92_019202' => 'vpl', 'HPP92_021131' => 'vpl', 'HPP92_021574' => 'vpl', 'Hund04964' => 'sun', 'Hund11265' => 'sun', 'Hund14416' => 'sun', 'Hund18913' => 'sun', 'Hund19753' => 'sun', 'Hund20559' => 'sun', 'Lalb_Chr01g0003661' => 'lal', 'Lalb_Chr02g0147281' => 'lal', 'Lalb_Chr03g0026641' => 'lal', 'Lalb_Chr05g0220591' => 'lal', 'Lalb_Chr06g0167161' => 'lal', 'Lalb_Chr09g0329511' => 'lal', 'Lalb_Chr13g0303631' => 'lal', 'Lalb_Chr18g0051711' => 'lal', 'Lj1C154T1' => 'lonja', 'Lj1g0022462' => 'lja', 'Lj1g0026626' => 'lja', 'Lj2A95T45' => 'lonja', 'Lj2C243G5' => 'lonja', 'Lj3A819T44' => 'lonja', 'Lj3C816T7' => 'lonja', 'Lj3C968T5' => 'lonja', 'Lj3g0012292' => 'lja', 'Lj4g0002436' => 'lja', 'Lj4g0019553' => 'lja', 'Lj6g0014465' => 'lja', 'Lj8C291G5' => 'lonja', 'Lsat_1_v5_gn_5_170800' => 'lsa', 'Lsat_1_v5_gn_5_53681' => 'lsa', 'Lsat_1_v5_gn_6_64820' => 'lsa', 'Lsat_1_v5_gn_6_88140' => 'lsa', 'Lsat_1_v5_gn_8_75720' => 'lsa', 'Lsat_1_v5_gn_9_23281' => 'lsa', 'Manes.01G236400' => 'mes', 'Manes.04G034600' => 'mes', 'Manes.05G006800' => 'mes', 'Manes.08G078900' => 'mes', 'Manes.09G091133' => 'mes', 'Manes.11G130900' => 'mes', 'Manes.15G012600' => 'mes', 'Manes.15G130250' => 'mes', 'Manes.15G169600' => 'mes', 'Manes.17G013600' => 'mes', 'Mapoly0029s0095' => 'mpo', 'Mapoly0096s0013' => 'mpo', 'MBI04_g22957_MAGBIO' => 'mbi', 'MBI07_g31505_MAGBIO' => 'mbi', 'MBI14_g20111_MAGBIO' => 'mbi', 'MBI18_g03860_MAGBIO' => 'mbi', 'MBI18_g28918_MAGBIO' => 'mbi', 'MBI18_g28919_MAGBIO' => 'mbi', 'MBI18_g44303_MAGBIO' => 'mbi', 'MBI18_g44304_MAGBIO' => 'mbi', 'MBI18_g44305_MAGBIO' => 'mbi', 'MBI19_g29232_MAGBIO' => 'mbi', 'MD03G1094800' => 'mdo', 'MD03G1095000' => 'mdo', 'MD04G1128600' => 'mdo', 'MD04G1128700' => 'mdo', 'MD06G1031300' => 'mdo', 'MD11G1110000' => 'mdo', 'MD12G1141300' => 'mdo', 'MD13G1169100' => 'mdo', 'MD16G1170400' => 'mdo', 'MD16G1277400' => 'mdo', 'Medtr1g085530' => 'mtr', 'Medtr4g063905' => 'mtr', 'Medtr4g076560' => 'mtr', 'Medtr4g098650' => 'mtr', 'Medtr4g119830' => 'mtr', 'Medtr7g025640' => 'mtr', 'Medtr7g060770' => 'mtr', 'MELO3C003131.2' => 'cme', 'MELO3C006661.2' => 'cme', 'MELO3C013864.2' => 'cme', 'MELO3C025919.2' => 'cme', 'Migut.E00802' => 'egut', 'Migut.E00906' => 'egut', 'Migut.G00166' => 'egut', 'Migut.G00272' => 'egut', 'Migut.L01942' => 'egut', 'Migut.N02675' => 'egut', 'Migut.O00917' => 'egut', 'MSTRG.10092' => 'ama', 'MSTRG.10261' => 'ama', 'MSTRG.17833' => 'ama', 'MSTRG.19084' => 'ama', 'MSTRG.3921' => 'ama', 'MSTRG.5667' => 'ama', 'Nitab4.5_0000049g0200' => 'nta', 'Nitab4.5_0000202g0250' => 'nta', 'Nitab4.5_0000216g0230' => 'nta', 'Nitab4.5_0000349g0280' => 'nta', 'Nitab4.5_0000535g0040' => 'nta', 'Nitab4.5_0000535g0100' => 'nta', 'Nitab4.5_0000535g0110' => 'nta', 'Nitab4.5_0000570g0110' => 'nta', 'Nitab4.5_0000804g0030' => 'nta', 'Nitab4.5_0000960g0080' => 'nta', 'Nitab4.5_0001190g0050' => 'nta', 'Nitab4.5_0001911g0050' => 'nta', 'Nitab4.5_0002018g0080' => 'nta', 'Nitab4.5_0004094g0030' => 'nta', 'Nitab4.5_0004438g0060' => 'nta', 'Nitab4.5_0005076g0010' => 'nta', 'Nitab4.5_0006166g0030' => 'nta', 'Nn1g00579' => 'nnu', 'Nn1g07634' => 'nnu', 'Nn2g10374' => 'nnu', 'Nn2g15770' => 'nnu', 'Nn3g16187' => 'nnu', 'Nn4g22001' => 'nnu', 'Nn4g22051' => 'nnu', 'Nn4g25239' => 'nnu', 'Nn4g25874' => 'nnu', 'Nn5g26921' => 'nnu', 'Nn5g29556' => 'nnu', 'Nn6g33631' => 'nnu', 'Nn7g37893' => 'nnu', 'Oeu014969.1' => 'oeu', 'Oeu019198.1' => 'oeu', 'Oeu023284.1' => 'oeu', 'Oeu027728.2' => 'oeu', 'Oeu028042.1' => 'oeu', 'Oeu046665.1' => 'oeu', 'Oeu049240.1' => 'oeu', 'Oeu053063.1' => 'oeu', 'Oeu054147.1' => 'oeu', 'Oeu063355.1' => 'oeu', 'Os02g0690500' => 'osa', 'Os03g0275100' => 'osa', 'Os03g0372500' => 'osa', 'Os03g0821300' => 'osa', 'Os04g0403701' => 'osa', 'Os05g0111800' => 'osa', 'Peaxi162Scf00086g00428' => 'pax', 'Peaxi162Scf00094g00151' => 'pax', 'Peaxi162Scf00094g00161' => 'pax', 'Peaxi162Scf00094g01811' => 'pax', 'Peaxi162Scf00102g00634' => 'pax', 'Peaxi162Scf00165g01320' => 'pax', 'Peaxi162Scf00330g00311' => 'pax', 'Peaxi162Scf00498g00725' => 'pax', 'Peaxi162Scf00679g00411' => 'pax', 'Peaxi162Scf00695g00048' => 'pax', 'PGR004G2125' => 'pgr', 'PGR031G1031' => 'pgr', 'PGR031G3200' => 'pgr', 'PGR042G3168' => 'pgr', 'PGR102G3057' => 'pgr', 'PGR119G2102' => 'pgr', 'PGSC0003DMG400008839' => 'stu', 'PGSC0003DMG400008840' => 'stu', 'PGSC0003DMG400011321' => 'stu', 'PGSC0003DMG400019154' => 'stu', 'PGSC0003DMG400020517' => 'stu', 'PGSC0003DMG400030410' => 'stu', 'PGSC0003DMG401004637' => 'stu', 'PGSC0003DMG401017504' => 'stu', 'Phvul.001G219500' => 'pvu', 'Phvul.002G006100' => 'pvu', 'Phvul.003G105000' => 'pvu', 'Phvul.003G229400' => 'pvu', 'Phvul.008G101300' => 'pvu', 'Phvul.009G247700' => 'pvu', 'Phvul.011G064200' => 'pvu', 'Potri.001G144700' => 'ptr', 'Potri.001G239300' => 'ptr', 'Potri.002G185000' => 'ptr', 'Potri.003G089500' => 'ptr', 'Potri.003G159600' => 'ptr', 'Potri.006G085000' => 'ptr', 'Potri.008G207700' => 'ptr', 'Potri.009G030600' => 'ptr', 'Potri.010G024800' => 'ptr', 'Potri.014G110500' => 'ptr', 'Pp3c15_24030' => 'ppa', 'Pp3c3_31080' => 'ppa', 'Pp3c3_31091' => 'ppa', 'Pp3c8_5420' => 'ppa', 'Pp3c9_24220' => 'ppa', 'Prupe.1G137500' => 'ppe', 'Prupe.3G000700' => 'ppe', 'Prupe.5G040800' => 'ppe', 'Prupe.5G040900' => 'ppe', 'Prupe.6G078500' => 'ppe', 'Prupe.6G254600' => 'ppe', 'Psat0s1051g0040' => 'psa', 'Psat1g153680' => 'psa', 'Psat3g140360' => 'psa', 'Psat4g025840' => 'psa', 'Psat4g078680' => 'psa', 'Psat4g078720' => 'psa', 'Psat7g215960' => 'psa', 'PSO017G5780' => 'pso', 'PSO063G4207' => 'pso', 'PSO151G0205' => 'pso', 'PSO210G2466' => 'pso', 'PSO210G5843' => 'pso', 'PSO339G0169' => 'pso', 'PSO339G1363' => 'pso', 'PSO478G4742' => 'pso', 'PSO761G0338' => 'pso', 'PSO782G3159' => 'pso', 'QL01p032161' => 'qlo', 'QL02p061937' => 'qlo', 'QL06p008805' => 'qlo', 'QL07p013886' => 'qlo', 'QL07p048224' => 'qlo', 'QL09p037452' => 'qlo', 'QL12p006252' => 'qlo', 'RcHm_v2.0_Chr3g0466621' => 'rch', 'RcHm_v2.0_Chr3g0466691' => 'rch', 'RcHm_v2.0_Chr3g0466701' => 'rch', 'RcHm_v2.0_Chr4g0422121' => 'rch', 'RcHm_v2.0_Chr5g0064391' => 'rch', 'RcHm_v2.0_Chr7g0209091' => 'rch', 'Rhsim04G0156700' => 'rsi', 'Rhsim04G0221300' => 'rsi', 'Rhsim11G0012500' => 'rsi', 'Rhsim13G0083000' => 'rsi', 'Sabra01G0113000' => 'sbr', 'Sabra02G0130700' => 'sbr', 'Sabra03G0059300' => 'sbr', 'Sabra03G0116000' => 'sbr', 'Sabra06G0064500' => 'sbr', 'Sabra08G0153700' => 'sbr', 'Sabra09G0021500' => 'sbr', 'Sabra14G0081300' => 'sbr', 'Sabra16G0144300' => 'sbr', 'SalBow1G3060' => 'sbo', 'SalBow2G0667' => 'sbo', 'SalBow3G1696' => 'sbo', 'SalBow3G4180' => 'sbo', 'SalBow4G3020' => 'sbo', 'Sc01g0007610' => 'sci', 'Sc12g0001530' => 'sci', 'Sc19g0005190' => 'sci', 'Sc19g0005300' => 'sci', 'Sc20g0004920' => 'sci', 'Sed0006009' => 'sed', 'Sed0013804' => 'sed', 'Sed0015229' => 'sed', 'Sed0017295' => 'sed', 'Sed0021789' => 'sed', 'Sed0024125' => 'sed', 'SEGI_01997' => 'sgi', 'SEGI_26577' => 'sgi', 'SEGI_30530' => 'sgi', 'SGA_v2.0_scaffold126G33788' => 'sas', 'SGA_v2.0_scaffold203G41499' => 'sas', 'SGA_v2.0_scaffold20G09237' => 'sas', 'SGA_v2.0_scaffold35G14225' => 'sas', 'SGA_v2.0_scaffold410G51120' => 'sas', 'SGA_v2.0_scaffold495G52460' => 'sas', 'SGA_v2.0_scaffold67G22637' => 'sas', 'SGA_v2.0_scaffold6G03191' => 'sas', 'SGA_v2.0_scaffold94G28596' => 'sas', 'SHI05948' => 'shi', 'SHI07452' => 'shi', 'SMO169G0305' => 'smo', 'SMO271G0124' => 'smo', 'Solyc01g066870.3' => 'sly', 'Solyc03g065190.1' => 'sly', 'Solyc06g076100.3' => 'sly', 'Solyc08g007000.3' => 'sly', 'Solyc08g077150.3' => 'sly', 'Solyc09g010780.3' => 'sly', 'Solyc10g086490.2' => 'sly', 'Solyc12g099600.2' => 'sly', 'Sopen01g028470' => 'spe', 'Sopen06g032510' => 'spe', 'Sopen08g002970' => 'spe', 'Sopen08g025710' => 'spe', 'Sopen09g005500' => 'spe', 'Sopen10g035870' => 'spe', 'Sopen12g034270' => 'spe', 'Sp3g07780' => 'spa', 'Sp3g14880' => 'spa', 'Sp3g31860' => 'spa', 'Sp4g11700' => 'spa', 'Sp4g17570' => 'spa', 'Sp4g28950' => 'spa', 'Sp6g40080' => 'spa', 'TAR362G0042' => 'tar', 'TAR362G0916' => 'tar', 'TAR622G0421' => 'tar', 'TAR623G1245' => 'tar', 'TAR625G0132' => 'tar', 'TAR629G2261' => 'tar', 'TAR629G2792' => 'tar', 'TAR633G0705' => 'tar', 'TAR633G2581' => 'tar', 'TAR636G1705' => 'tar', 'TAR636G2198' => 'tar', 'THA.LOC104800657' => 'tha', 'THA.LOC104807963' => 'tha', 'THA.LOC104816275' => 'tha', 'THA.LOC104817413' => 'tha', 'THA.LOC104820260' => 'tha', 'THA.LOC104821774' => 'tha', 'THA.LOC104823259' => 'tha', 'THA.LOC104826330' => 'tha', 'Thecc.01G327800' => 'tca', 'Thecc.03G231200' => 'tca', 'Thecc.04G284100' => 'tca', 'Thecc.05G040100' => 'tca', 'Thecc.09G322300' => 'tca', 'Thhalv10001308m.g' => 'esa', 'Thhalv10012858m.g' => 'esa', 'Thhalv10016260m.g' => 'esa', 'Thhalv10016340m.g' => 'esa', 'Thhalv10020557m.g' => 'esa', 'Thhalv10022396m.g' => 'esa', 'TPR.G13853' => 'tpr', 'TPR.G14483' => 'tpr', 'TPR.G23265' => 'tpr', 'TPR.G25678' => 'tpr', 'TPR.G28666' => 'tpr', 'TPR.G30103' => 'tpr', 'TPR.G3059' => 'tpr', 'TPR.G3210' => 'tpr', 'TPR.G3215' => 'tpr', 'TWI09G0928' => 'twi', 'TWI23G0699' => 'twi', 'TWI31G0002' => 'twi', 'TWI59G0026' => 'twi', 'TWI60G1104' => 'twi', 'TWI73G0345' => 'twi', 'TWI74G0599' => 'twi', 'TWI75G1114' => 'twi', 'TWI79G1530' => 'twi', 'TWI81G0652' => 'twi', 'unitig_0.g2596' => 'ugi', 'unitig_21.g20540' => 'ugi', 'unitig_744.g24658' => 'ugi', 'unitig_747.g22030' => 'ugi', 'vmacro00344' => 'vma', 'vmacro03075' => 'vma', 'vmacro08146' => 'vma', 'vmacro08658' => 'vma', 'vmacro22974' => 'vma', 'VMungo0251G0169' => 'vmu', 'VMungo0331G0379' => 'vmu', 'VMungo0464G0828' => 'vmu', 'VMungo1127G1064' => 'vmu', 'VMungo1215G1748' => 'vmu', 'VMungo1215G2082' => 'vmu', 'VMungo1309G0757' => 'vmu', 'VMungo1383G1011' => 'vmu', 'VMungo1383G2981' => 'vmu', 'Zm00001eb012350' => 'zma', 'Zm00001eb018090' => 'zma', 'Zm00001eb062680' => 'zma', 'Zm00001eb084510' => 'zma', 'Zm00001eb211690' => 'zma', 'Zm00001eb240140' => 'zma', 'Zm00001eb251160' => 'zma', 'Zm00001eb306080' => 'zma', 'Zm00001eb306090' => 'zma', 'Zm00001eb355760' => 'zma', 'Zm00001eb372440' => 'zma', 'Zm00001eb372450' => 'zma', 'Zm00001eb394120' => 'zma', 'Zm00001eb397680' => 'zma', 'Zm00001eb397690' => 'zma', 'Zm00001eb421700' => 'zma' ) $gf_id = 'HOM05D000788' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000788' ) $data_identifier = 'HOM05D000788' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 9, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 5, 'arhy' => (int) 14, 'ath' => (int) 7, 'atr' => (int) 6, 'acertr' => (int) 5, 'cqu' => (int) 8, 'bca' => (int) 23, 'bol' => (int) 12, 'bra' => (int) 12, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 7, 'car' => (int) 6, 'ccan' => (int) 4, 'cde' => (int) 15, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 4, 'csa' => (int) 4, 'camsi' => (int) 10, 'dca' => (int) 10, 'din' => (int) 11, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 4, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 13, 'ghi' => (int) 14, 'gra' => (int) 7, 'vvi' => (int) 7, 'han' => (int) 8, 'cav' => (int) 5, 'hma' => (int) 7, 'vpl' => (int) 10, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 7, 'lja' => (int) 6, 'lsa' => (int) 6, 'mes' => (int) 10, 'mpo' => (int) 2, 'mbi' => (int) 10, 'mdo' => (int) 10, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 17, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 6, 'pax' => (int) 10, 'pgr' => (int) 6, 'stu' => (int) 8, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 5, 'ppe' => (int) 6, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 7, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 9, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 3, 'sas' => (int) 9, 'shi' => (int) 2, 'smo' => (int) 2, 'sly' => (int) 8, 'spe' => (int) 7, 'spa' => (int) 7, 'tar' => (int) 11, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 6, 'tpr' => (int) 9, 'twi' => (int) 10, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 9, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421700' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1